Butternut Squash and Quinoa Soup

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A deliciously healthy broth-based chicken, quinoa, and butternut squash soup made simple in the slow cooker. 
The best crockpot healthy chicken and quinoa soup

Crockpot Butternut Squash, Chicken, & Quinoa Soup Delicious Slow Cooker Butternut Squash, Chicken, and Quinoa Soup The EASIEST plus healthy crockpot butternut squash, chicken, and quinoa soup


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Butternut Squash and Quinoa Soup

4.88 from 31 votes
A deliciously healthy broth-based chicken, quinoa, and butternut squash soup made simple in the slow cooker. 
Crockpot healthy chicken and quinoa soup
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Butternut Squash and Quinoa Soup

Crockpot healthy chicken and quinoa soup
4.88 from 31 votes
A deliciously healthy broth-based chicken, quinoa, and butternut squash soup made simple in the slow cooker. 
Course Dinner
Cuisine American
Keyword Butternut Squash and Quinoa Soup
Prep Time 15 minutes
Cook Time 3 hours
Total Time 3 hours 15 minutes
Servings 6 -8
Calories 215kcal
Author Chelsea
Cost $7.24


  • 1 and 1/2 pounds boneless skinless chicken breasts
  • 1 cup quinoa
  • 1 (~4 cups) small butternut squash
  • 1 can (15.25 ounces) kidney beans
  • 1 can (15 ounces) corn
  • 1 can (14.5 ounces) petite diced tomatoes*
  • 2 teaspoons minced garlic
  • 1 packet (1.12 ounces) fajita seasoning mix
  • 5 cups chicken broth**
  • Salt and pepper to taste
  • Optional: fresh parsley, sour cream, cheddar cheese


  • Remove the fat from the chicken. Rinse the quinoa in a fine mesh sieve to remove the bitter saponin coating.
  • Peel, seed, and chop the butternut squash into small bite-sized pieces (or buy pre-chopped butternut squash for an even faster prep).
  • Rinse and drain the kidney beans and corn.
  • Lightly grease your slow cooker with nonstick spray (I use a 6-quart crockpot). Add in the chicken, quinoa, chopped squash, kidney beans, corn, undrained tomatoes, garlic, and fajita seasoning packet. (OR try a chili seasoning packet if you enjoy those flavors better).
  • Pour in the chicken broth and give everything a good stir.
  • Cover and cook on high for 3-4 hours or until the quinoa is cooked through and the squash is very tender.
  • At this point you can remove some of the squash and mash it with a potato masher and then put it back in the soup. This is totally optional, but makes it a bit heartier.
  • Add some salt and pepper to taste and any other seasonings desired. Garnish with fresh parsley if desired.
  • If desired, stir in some sour cream (we use and love reduced fat or fat free) and some freshly grated cheddar cheese.
  • NOTE: slow cookers are known for cooking at different speeds - if yours tends to cook faster your chicken and squash could be done even earlier than 3 hours and alternatively everything may take longer to cook in a cooler slow cooker. The longer this cooks the more liquid the quinoa absorbs - if you don't mind that's fine, otherwise you can always add some more chicken broth and seasoning.

Recipe Notes

*I used fire roasted petite diced tomatoes for an extra kick of flavor. **Instead of chicken broth, I use chicken bouillon cubes dissolved in boiling water. 

Nutrition Facts

Calories: 215kcal

We do our best to provide accurate nutritional analysis for our recipes. Our nutritional data is calculated using a third-party algorithm and may vary, based on individual cooking styles, measurements, and ingredient sizes. Please use this information for comparison purposes and consult a health professional for nutrition guidance as needed.


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Nutrition facts in butternut squash and quinoa soup

Recipe adapted from my Sweet Potato, Chicken, & Quinoa Soup

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Recipe Rating


  1. This looks so hearty, but healthy! I also love the color in this dish…many times soup looks very dull, but this is bright and fresh! Also, I’ve never thought to use fajita seasoning..might have to try that in some of my fall soups/chilis. Thanks as always for sharing!

  2. I would have to substitute the chicken for something else (or take it out altogether), but i DEFINITELY am pinning this to make later. I love butternut squash and adding kidney beans to soup for protein. Delicious 🙂

  3. I love making soup in my crockpot and am always looking for new ideas! This soup sounds wonderful! I have yet to buy butternut squash this season … so soon, so soon!

  4. 5 stars
    I love this soup. I made it tonight. I put a can of rotel in the place of diced tomatoes, it was delish. I will be making this again. Thanks for the recipe!

    1. If your chicken breasts are small you don’t need to cut them up, but I generally will cut up the breasts into 2-4 large pieces to help it cook quicker and in time with the other ingredients 🙂 Hope you love this!!

    1. I recommend just doing the high setting. At a low setting the quinoa ends up absorbing tons more liquid and becomes less “firm.” If you don’t mind having more of a stew and a slightly different textured quinoa, the low setting will be fine.

      1. 5 stars
        I did it on low for about 7-8 hours. It definitely turned out more stew like. I put the quinoa in right away in the morning, but you could also throw it in towards the end if you wanted it firmer/less stew like. I also think that if we had eaten it about 6 hours in it would’ve been more soup like, based on what I saw when I shredded the chicken. The chicken turned out so tender this way though! The soup (or stew!) was delicious.

  5. 5 stars
    Soup looks stunning, but I hate kidney beans. Any other suggestion?
    Thank you for sharing
    Kind regards

      1. I would def. use black beans. I think this recipe begs for them. To the writer who thought it was bland,, maybe addin a spicy salsa instead of the tomatoes might help in addition to adjusting spiced to taste. Just a thought. I’m planning to make this tomorrow. Would ground beef or sausage, pre-cooked work in this recipe as well?

        1. We’ve actually made this with black beans too and it was awesome!! Definitely add in a can if you like them 🙂 And yes, I think ground beef would be delicious in this! Not sure about ground sausage from a flavor perspective, but it may work!

  6. Nutrition facts about these recipes would be very helpful. Needed for health reasons in fact. Please. Thank you.

    1. For 7 servings (divide the soup into 7 equal portions):

      Nutrition Facts

      Amount Per Serving
      Calories 470 Calories from Fat 50
      % Daily Value *
      Total Fat 5g 8%
      Saturated Fat 0.5g 3%
      Trans Fat
      Cholesterol 20mg 7%
      Sodium 590mg 25%
      Potassium 1800mg 51%
      Total Carbohydrate 80g 27%
      Dietary Fiber 16g 64%
      Sugars 7g
      Protein 31g
      Vitamin A 150%
      Vitamin C 60%
      Calcium 10%
      Iron 40%
      * Percent Daily Values are based on a 2,000 calorie diet. Your Daily Values may be higher or lower depending on your calorie needs.

      1. Total sodium without even adding chicken, quinoa or butternut squash is over 7,000… how is it only 500 a serving?

        1. Sodium can very a lot by brand or if use no salt added beans, corn ,tomatoes or broth. I’m trying it tonight with no salt added beans and broth .

    1. So great to hear!! Thank you Julia! I’ve actually never frozen this soup, but I haven’t had great success with freezing and then thawing cooked quinoa in a soup so I’m not sure how it would work out. Sorry to not be of more help.

        1. You are so awesome!!! Thanks for coming back and telling your results — it helps so many people!! I appreciate it 🙂

    1. Glad to hear you liked it! Thanks for the comment 🙂 Yeah I’ve never had great success cooking these kinds of soups on low for long periods of time so that’s why I suggest high for a shorter period 🙂

    1. Oh bummer! I’m sad you didn’t love it!! Did you change anything about the recipe? Everyone likes different levels of spice so I would recommend adding some different spices if you try this again. Perhaps instead of using a packet try your own mix of spices! 🙂 Or you could leave the recipe as is and just add a few additional teaspoons of different spices such as chili powder, cumin, paprika, cayenne pepper, garlic powder. (These are the general spices in a fajita seasoning packet, you would just be increasing the amount to your preference!

  7. So you don’t cook the chicken or squash before you put it in? I’ve never made a slow cooker soup/chili recipe that doesn’t use already cooked and shredded chicken.

    1. Right! The chicken and squash will cook in the slow cooker which is what makes this recipe so easy!! 🙂

  8. I’m looking forward to trying this out this weekend! Just wanted to ask, I assume this recipe is for a 4qt Crockpot? I’ve got a smaller 3qt and will have to adjust it.

  9. This looks so good & I love that it’s crock pot friendly! Definitely trying. I totally related to your comment about your husband – last time I made soup I ADDED meat to it but my husband said it needed more meat and sometimes he thought I was a “partial vegetarian” – after adding meat! haha. I do love how hearty the soups are with squash.

  10. I just wanted to let you know that I tried this tonight and it was excellent! I don’t like corn, so I omitted that, and I didn’t have any fajita mix, so I used a few different spices. I am not a big chili fan, so I dumbed down the “hotness” that’s really in fajita mix. I used lentils instead of rice, and I used tomato sauce instead of diced tomatoes. It was really good! We have too much, so I am going to share it with the family. Thanks for the recipe!

    1. LOVE hearing all the creative ways you changed up this soup — I need to try it with lentils 🙂 Sounds awesome! Thanks for the comment!!

  11. 5 stars
    Gotta tell ya… As a hard-working single lady that spends 2-3 hours commuting for a 9+ hour work day, I love having “Crockpot Sundays” in order to keep the cooking to a minimum during the week, but I will easily get tired of eating the same thing after 4 meals…. BUT NOT THIS! SUPER YUM and SATISFYING!! Made it a few weeks ago and already planning to make it again for the short week before the holiday. Thanks for sharing!!!

  12. Hi Chelsea,
    This is right up my alley! Can’t wait to make it today. I love your comment about your husband mine is the exact way, will eat it but start snacking! Just a quick question for the broth how many bouillon cubes did you use and how much water?

    1. Hi Anna! I’m sorry for the delayed response on your comment! Trying my hardest to get through all of them as quickly as possible 🙂 I used 5 cups water and then add 5 teaspoons of chicken bouillon powder (or 5 cubes that would equal a teaspoon if crushed down and measured — so just not the super huge cubes) I lately tend to use the chicken bouillon powder more than cubes but either will work!

  13. I tried this after finding it on Pinterest… I left out the chicken and it was still delicious! Absolutely love this flavorful, healthy, unique recipe. Delicious 🙂

  14. 5 stars
    This soup was fabulous!! I added medium salsa instead of canned tomatoes and used a blend of Tex Mex seasoning and chili powder. It had amazing flavour. Even my two and four year old boys ate it! I pureed three quarters of the squash which made it nice and creamy. I don’t think it needs any toppings. It’s great the way it is! I’ll definitely make it again. I might try sweet potatoes next time for fun. This is a good hearty winter soup. I wonder… Has anyone tried freezing it? Wondering if it would be ok? (although I’m ok with having it for leftovers for the next couple days too 😉 Thanks for the recipe!

    1. Yeah!! So great to hear 🙂 Thank you so much Krystel! 🙂 It’s the best when those little kiddos will eat it up too 🙂 I haven’t tried freezing it, so I’m not sure, but hopefully another reader can comment to that!

  15. I know I’m a little late to the original post and most comments but I just found this soup and I believe I am going to make it this weekend. I just wanted to know if it will throw off the texture if I omit beans altogether? My husband hates beans of any kind so switching them out won’t work. Is there something else I could substitute in or should I forego beans? Thanks!

    1. You can absolutely forgo them, just knowing they do add a nice texture and taste to the soup so it may seem like it’s missing something, but I’m not sure what to suggest in its place..maybe increase the quinoa by a little? Wish I could be of more help!!

  16. 5 stars
    I just made this and substituted curry for the fajita mix. Wow, fantastic! Thank you so much for posting this!! This may be my new favorite meal. I bought a big container of precut butternut squash at Costco and a quick look at Pinterest to find this recipe made a match made in heaven. Mmm.

    1. I am so happy to hear you enjoyed this recipe! And precut squash sounds perfect and makes for such a simple dinner! 🙂 And YUM on the curry — I am definitely going to have to try that the next time we make this!

  17. This soup sounds delicious. Just curious if I didn’t want the squash mushy could I add it in later so it won’t cook so long? Maybe the last hour?

    1. If you put it in the last hour I believe it will still be pretty hard. It takes the squash quite a bit of time in the slow cooker to get tender enough to eat.

  18. Haven’t tried this yet but would like to know if anyone has used chicken thighs instead of breasts. Like the flavor of thighs. Thanks

  19. 5 stars
    I LOVE this soup. I made it a couple of weeks ago and I’m dying to try it again already! I was thinking about adding in some kale towards the end to switch it up and get a little more leafy greens in my diet. Any thoughts on this addition, Chelsea?

    1. SO glad to hear that! 🙂 Thank you so much for the comment! I think kale would be wonderful in it! I’d add it just the last 15-20 minutes until wilted 🙂 Enjoy!

  20. I’ve made this recipe twice now and I just love it!! I was just wondering if the nutritional facts are per serving or for the entire batch? Really hearty soup. Im obsessed!!

    1. So, so glad to hear that! Thank you so much for the comment and trying this soup Megan! 🙂 Nutrition is per serving 🙂

  21. 5 stars
    Excellent recipe! Just curious, in order to calculate how many weight watchers points it would be, is the nutritional facts pertaining to the whole batch or is that just one serving?

  22. Chelsea, this soup was absolutely delicious and so easy to put together! I followed the recipe as is with a tiny modification – I added a squeeze of lime along with the salt and pepper to add a nice and bright citrus note to the flavor. I will definitely be making this again! 🙂

  23. This sounds delicious! Do you think it would be ok to use chicken and squash that’s frozen. Or do you recommend dethawing first?

  24. What spices or flavors would u recommend if I didn’t want it Mexican or chili flavoring? I’m so bored of chili lately and want to make this but swap out fajita or chili spices

  25. 5 stars
    This is the best soup I’ve had in a while. I used black beans instead of kidney and loved it! The butternut squash cooked so wonderfully that the smaller pieces mashed themselves up as I stirred in the shredded chicken. Will make again, especially for my mother. Thanks so much for a great recipe!!!

    1. I’m so thrilled you enjoyed this soup Kendra! Thank you so much for taking the time to comment and leave a review 🙂

  26. Just curious about your thoughts on using pre-cooked chicken or rotisserie chicken, or even canned shredded chicken? Would it change the flavor?

    1. I haven’t had success with rice cooking evenly in the crockpot, but if you cooked it separately and stirred it in I think it would be great!

      1. This is what I was coming to see! Thanks! We like quinoa but when our youngest was a child she had an anaphylactic reaction to it that ended in the hospital so we avoid quinoa 🙁

  27. 5 stars
    Love it!! Made this today as I wanted to eat something lighter and healthier after a couple days of the flu, and it was a perfect meal. My fiancé, who rarely eats soup, asked for seconds (for that alone, Thank You)! I did substitute the spices for a pinch of chili powder, cumin, salt and pepper. Also, I did mash some squash cubes at the end, and it was that much more scrumptious!

    Thank you!

  28. Do you think this could be cooked in the Instant Pot? I received one for Christmas and have been wanting to try it out, and this seems like the ideal recipe. Just not sure how the timing would be in the IP compared to the crockpot. Thoughts?

    1. I’m sure it could do okay in the instant pot, but I’ve never tried quinoa in one so I really have no idea on the timing or how it would work. I wish I could be of more help

  29. 4 stars
    I thought the soup was delicious but I felt like the quinoa wasn’t substantial enough…maybe ditalini pasta or hearty barley would suit me better. Also I added fresh kale in to give it a green veggie and freshness.

  30. 5 stars
    I made this tonight and it was delicious! I roasted a chicken yesterday and just used pulled pieces of that in the soup at the very end. My quinoa soaked up most of the liquid on the high setting for 4hrs, making it more of a stew, so I just added hot chicken broth to the bowls to turn it back into a soup.

  31. 5 stars
    Thank you for sharing this recipe – I made it yesterday and it’s so delicious!! So good that my husband and I stood over the slow cooker eating straight from it with spoons!

  32. 5 stars
    Outstanding flavor. I did not have corn and used pinto beans as well as leftover grilled chicken breasts cubed that I added 1/2 way through. Toco chips as a garnish was nice.

  33. 5 stars
    Love this soup! I’ve made it multiple times this fall already. It’s great with a taco seasoning packet. I also like adding 1/2 c mild salsa

  34. 5 stars
    I rarely cook but i’ve started to try and cook more, I tried this recipe and it was SO easy and tasted amazing!

    I’m wondering – has anyone tried adding more veggies into it, like carrots? I’m thinking of experimenting like that a little. Thanks!

  35. 5 stars
    Made this in the instant pot and came out great! Manual setting for 25 min. Left the quinoa out and added it at the end and reset for 3 min. Perfect!

  36. 5 stars
    We love this recipe. It’s hearty with great flavor and incredible for cold days in the Midwest. My question is have you ever made it in the instant pot, recommendations for cooking time?

    1. So happy to hear that!! Thanks Laura 🙂 I haven’t personally made it in the instant pot; hopefully some other readers can chime in!

  37. 5 stars
    I made this tonight! Very good! Thank you for a great recipe. I’ve been looking for something different and healthy and this fit the bill. One change I made was to puree the squash in a blender with the broth first then add it to the crock pot with the rest of the ingredients. I’m not a huge fan of squash (or vegetables in general… gasp!) but I know I’ve gotta eat more of them and this was a great way to sneak them in (for everyone in the house) 🙂

    Also, I started making the soup and thought I had an entire bag of chicken in the freezer… open up the freezer and I have NONE. Oops. I had some tenderized steaks I had no idea what to do with so I threw them in instead. Chicken would have been better I think, but it worked!

  38. 5 stars
    First: I’ve made this recipe multiple times and love it. But…
    After multiple attempts, I came to grips with the reality that using my slow cooker setting on my instantpot just isn’t a good crockpot substitute- at least with this recipe (I think it’s most likely b/c the recipe has a lot of ingredients with different densities and compositions).
    SO – Not to be discouraged, tonight I tried this recipe in my instantpot, pressure cooker setting this time, and it worked great! Here’s what I did:
    1. Made sure to put the butternut squash in first, since it’s the densest.
    2. I mixed the fajita seasoning into the chicken broth so that the seasonings would be evenly distributed throughout the broth
    3. Added the rest of the ingredients in per the instructions.
    4. Set the instant pot on manual cooking setting, on high for 23 minutes.
    5. Voila! All done in about 40 minutes (accounting for the IP to come to pressure)
    (This method does overcook the quinoa a bit, but not so much that it’s significantly different than my results with the slow cooker)

    1. Thank you so much for sharing all this!! Appreciate it and I’m sure this will help so many people trying to use an instant pot instead of a crockpot 🙂

  39. 5 stars
    I love this recipe! I’ve made it so many times and still love it. I prefer white beans so I usually use those instead and I add a diced onion, but otherwise it’s perfect! Would recommend adding sour cream, makes it nice and creamy!

  40. 5 stars
    Love love LOVE! If anyone has a smaller crockpot like me, I reduced the quinoa down to 1/2 cup and 3 cups of broth – turned out perfectly 🙂

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