Healthy Pumpkin Cookies are flourless, free of refined sugar, and made without oils or butter. Mix everything in one bowl and they’re ready in under 30 minutes.

Healthy Pumpkin Cookies fresh out of the oven.
chelsea

author’s note

One Bite = Hooked on These Pumpkin Cookies!

I created these Healthy Pumpkin Cookies one afternoon when I had an open can of pumpkin puree sitting in the fridge and didn’t want it to go to waste. I didn’t feel like making another loaf of bread or muffins, and I was craving something quick, easy, and sweet. That’s when these cookies came together!

I tested them a few different ways. Sometimes with chocolate chips, sometimes with walnuts, and sometimes plain. Every version disappeared fast in my house. My kids even started asking for them in their lunches, which is always the biggest win for me. I love that these cookies feel indulgent but are made with wholesome ingredients I can feel good about.

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Ingredients being added to a bowl, mixing to combine, chocolate being added to the dough, then it being rolled and baked.

Ingredients

IngredientSwaps or Tips
Pumpkin PureeUse canned pumpkin, not pumpkin pie filling. If homemade puree is watery, blot with paper towels.
Almond ButterSwap with cashew butter for a mild flavor or peanut butter for a stronger taste.
Maple SyrupHoney works too, though flavor will change slightly.
OatsRolled oats work best. Use certified GF if needed.
SpicesAdjust cinnamon and pumpkin pie spice to your liking.
Dark Chocolate ChipsTry chopped pecans, dried cranberries, or white chocolate chips for a twist.

How To Make Healthy Pumpkin Cookies

  1. Prep: Preheat oven to 350°F and line baking sheets with parchment paper.
  2. Mix wet ingredients: Stir pumpkin, egg yolk, almond butter, maple syrup, vanilla, baking soda, salt, and spices in one bowl.
  3. Add dry: Blend oats into flour, then stir into the bowl.
  4. Fold in extras: Mix in chocolate chips or nuts. Chill dough briefly (about 10 minutes).
  5. Shape & bake: Scoop dough, flatten slightly, and bake 6–7 minutes until tops are just set. Cool on the sheet before enjoying.

More Pumpkin Desserts:

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4.88 from 31 votes

Healthy Pumpkin Cookies

With no refined sugars or flour, these Healthy Pumpkin Cookies are both simple and delicious!
Prep Time: 15 minutes
Cook Time: 6 minutes
Total Time: 21 minutes
Servings: 15 cookies

Equipment

  • 2 Sheet pan (15" x 10") with liners
  • Blender or food processor

Ingredients

  • 2 tablespoons pumpkin
  • 1 large egg yolk discard the egg whites or use in a different recipe
  • 1/2 cup almond butter
  • 1/4 cup maple syrup
  • 1/2 teaspoon vanilla extract
  • 1/2 teaspoon baking soda
  • 1/4 teaspoon salt
  • 1-1/2 teaspoons pumpkin pie spice
  • 1/4 teaspoon ground cinnamon
  • 1/2 cup oat flour old-fashioned or quick oats; oats that have been blended, see note 1
  • 1/2 cup dark chocolate chips coarsely chopped
  • Flaky sea salt optional

Instructions 

  • Preheat oven to 350°F. Line 2 large sheet pans with parchment paper or a nonstick liner and set aside.
  • In a large bowl, add the pumpkin, egg yolk, almond butter, maple syrup, vanilla extract, baking soda, salt, pumpkin pie spice, and ground cinnamon. Mix until smooth.
  • Grind up oats in a blender or food processor until the oats are the texture of regular flour. Make sure to measure the 1/2 cup after grinding the oats so you have a leveled 1/2-cup measure of blended oats. Add to the cookie dough. Mix dough with a wooden spoon or hand mixer until the dough is smooth and well combined.
  • Coarsely chop the chocolate chips and stir into the batter. Cover dough and refrigerate for 10 minutes.
  • Use a tablespoon to scoop out cookie dough balls. It is sticky, so use a finger or another spoon to coax the dough from the spoon onto the prepared trays. Smooth and flatten the tops of the cookie dough balls. Space them about 2 inches apart to fit 8 per tray. Bake, 1 tray at a time, for 6–7 minutes. Cookies should still look very soft; watch carefully to not overbake. As soon as the tops are no longer wet and glossy, they are done.
  • Remove the trays from the oven and let the cookies stand on the cookie sheet for 10 minutes without touching. If desired, press a few more chocolate chips into the tops of the cookies and sprinkle a pinch of sea salt flakes. Then use a metal spatula to transfer the cookies to a cooling rack. These cookies are very fragile and will fall apart right out of the oven if handled while still hot. They set up and solidify as they cool.
Final step! Please let us know how it was by leaving a review.

Recipe Notes

Note 1: Be sure to measure the oats after they’ve been blended—not before. You should have a leveled 1/2 cup of blended oats.
Note 2: This recipe has been modified slightly to completely remove the refined sugars and improve the texture a bit. Here’s the recipe from 2014 if desired.
Safety: Ensure all the products you are using are indeed gluten-free. While all the ingredients listed are naturally gluten-free, they are sometimes made in facilities with gluten. To be safe, always check the labels of what you’re using.
Storage: Keep in an airtight container for up to 3 days, or keep in a sealed container for up to a week. You can also wrap cookies individually and freeze for up to 3 months, thaw at room temperature.

Nutrition

Serving: 15cookies | Calories: 137kcal | Carbohydrates: 14g | Protein: 4g | Fat: 8g | Saturated Fat: 3g | Cholesterol: 12mg | Sodium: 86mg | Potassium: 150mg | Fiber: 2g | Sugar: 6g | Vitamin A: 328IU | Vitamin C: 1mg | Calcium: 62mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Healthy Pumpkin Cookies Tips

  • Press extra chocolate chips on top after baking for picture-worthy cookies.
  • Don’t over-bake: They’re best when just set in the center.
  • Cool completely: These cookies firm up as they cool.
  • Customize add-ins: Pecans, walnuts, or dried fruit all taste amazing.

Storage

  • Room Temperature: Store healthy pumpkin cookies in an airtight container for up to 3 days.
  • Refrigerate: Keep in a sealed container for up to a week for freshness.
  • Freeze: Wrap cookies individually and freeze for up to 3 months; thaw at room temperature.

Meet Chelsea


Hello, and welcome to Chelseaโ€™s Messy Apron! Iโ€™m Chelsea, the recipe developer, food photographer, and writer behind the site. Iโ€™m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping byโ€”I hope you find something delicious to make!

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4.88 from 31 votes (5 ratings without comment)

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113 Comments

  1. Krysta says:

    5 stars
    I, my husband, and my son all love these cookies! They are picky eaters too! This is my go-to recipe every year now! I am so grateful for yummy, healthy options! Thanks so much!

    1. Chelsea says:

      Yay! So thrilled these healthy pumpkin cookies have been such a hit! Thanks Krysta! ๐Ÿ™‚