Try these Healthy Blueberry Muffins, packed with fresh blueberries and made with Greek yogurt, coconut oil, and wholesome ingredients—delicious and simple!

Healthy Blueberry Muffins stacked on top of each other with a bite out of the top one.

Healthy Blueberry Muffins

When my husband asked for big, fluffy blueberry muffins like the ones from a bakery, I found a recipe that was good but too sweet and buttery for breakfast.

I changed it up with better ingredients like Greek yogurt and coconut oil, keeping the bakery-style flavor. The result? My husband loved these even more than the original sugary ones—mission accomplished with a healthier, tastier muffin!

All the ingredients used in this breakfast

Healthy Blueberry Muffin Ingredients

  • White flour/white whole-wheat flour: Whole wheat or white flour works.
  • Cornstarch: Helps make muffins soft.
  • Baking powder: Ensure freshness for proper rise.
  • Salt: Brings out the flavor.
  • Blueberries: Fresh berries are best; if using frozen, don’t thaw.
  • Egg: Best at room temperature.
  • Honey-vanilla Greek yogurt: Keeps muffins moist and soft.
  • Vanilla extract: You can also use vanilla bean paste.
  • Coconut oil: Keeps muffins moist and light.
  • Light brown sugar: Adds moisture and sweetness; white sugar works too.
  • Coarse sparkling sugar (optional): Adds a crunchy, sweet topping.
Dry ingredients being mixed together and the wet ingredients being mixed together for these healthy blueberry muffins.

Quick Tip

Mixing blueberries with flour helps keep them spread out in the batter. If added last, they’ll sink to the bottom, and the top won’t have any berries. Gently tossing them in flour keeps them in every bite!

How To Make Healthy Blueberry Muffins

  1. Preheat oven: Set to 350°F and grease the muffin tin (or use paper liners).
  2. Mix dry ingredients: Stir together the dry ingredients.
  3. Coat blueberries: Toss blueberries in the dry mix.
  4. Whisk wet ingredients: Mix the wet ingredients together. Gently combine the two.
  5. Bake: Spoon the batter into the tin. Bake for 20-25 minutes.
  6. Cool: Let muffins cool on a wire rack and enjoy!
Dry and wet ingredients being mixed together and baked in a muffin tin.

Storage

Leftovers?

Store leftover healthy blueberry muffins in an airtight container at room temp for up to 3 days.

For longer storage, freeze them in a sealed bag and bake from frozen with extra time.

Healthy Blueberry Muffins stacked on top of each other.

More Healthy Baked Goods:

4.86 from 21 votes

Healthy Blueberry Muffins

These Healthy Blueberry Muffins are bursting with flavor, are moist and soft, and so delicious! They’re made with better-for-you ingredients including Greek yogurt, coconut oil, and plenty of blueberries.
Prep Time: 15 minutes
Cook Time: 30 minutes
Total Time: 45 minutes
Servings: 9 muffins

Equipment

Ingredients

Dry Ingredients
  • 1 cup all-purpose flour or white whole-wheat flour
  • 1 tablespoon cornstarch
  • 1-1/2 teaspoons baking powder
  • 1/4 teaspoon salt
  • 3/4 cup fresh (small) blueberries
Wet Ingredients

Instructions 

  • Preheat oven to 350°F (175°C). Generously coat a muffin pan with cooking spray or use paper liners. Measure and set out the egg and yogurt to reach room temperature. Melt coconut oil, measure, and set aside to get to room temperature (see note 1).
  • In a large bowl, add the flour (use a food scale if you have it—125g) and remaining dry ingredients. Stir until blueberries are nicely coated in flour.
  • Ensure wet ingredients are at the same temperature to avoid clumps, then add all in another bowl. Whisk until completely smooth.
  • Sprinkle dry ingredients over wet and fold with a spatula until combined and no streaks of flour remain. Don’t overmix.
  • Spoon batter into a 1/4-cup measuring cup to perfectly fill it to the top. Then scoop that batter into each muffin cavity.
  • Optional: If desired, sprinkle a little bit of extra sugar (1/2 teaspoon) on the tops.
  • Bake for 20–25 minutes or until a toothpick when inserted in the center comes out clean or with moist crumbs.
  • Right out of the oven, use a table knife to gently trace around the edges of the muffins. Let muffins cool for 5 minutes before removing from the tin. Use a table knife to gently coax the muffins out. Let muffins finish cooling on a cooling rack so the bottoms don’t get soggy as they cool. Enjoy warm!

Recipe Notes

Note 1: Cold eggs and/or yogurt will cause your melted coconut oil to harden and clump—make sure the eggs and yogurt are at room temperature!
Storage: Store leftover muffins in an airtight container at room temperature for 2-3 days, or in the fridge for up to a week. For longer storage, freeze them in a sealed bag or container for up to 3 months. Thaw at room temperature or microwave for a quick warm-up.

Nutrition

Serving: 1serving | Calories: 219kcal | Carbohydrates: 35g | Protein: 5g | Fat: 7g | Saturated Fat: 5g | Polyunsaturated Fat: 0.3g | Monounsaturated Fat: 1g | Trans Fat: 0.003g | Cholesterol: 21mg | Sodium: 151mg | Potassium: 78mg | Fiber: 1g | Sugar: 14g | Vitamin A: 37IU | Vitamin C: 1mg | Calcium: 70mg | Iron: 2mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Meet Chelsea


Hello, and welcome to Chelseaโ€™s Messy Apron! Iโ€™m Chelsea, the recipe developer, food photographer, and writer behind the site. Iโ€™m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping byโ€”I hope you find something delicious to make!

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4.86 from 21 votes

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75 Comments

  1. Rose says:

    Is there a substitute for coconut oil?

    1. Chelsea says:

      Butter works great!

  2. Regina Aferi says:

    5 stars
    DELISH! Made them in mini muffin tins & baked for 11 minutes. I also used plain Greek yogurt. I wonder if brown sugar would do just as well instead of white? Thanks Chels!

  3. Goulddaddy says:

    5 stars
    My picky kids devoured these and I feel like they have been fooled lol. Ty doo much. These are ultra moist and mine had a perfect crisp to them.

    1. Chelsea Lords says:

      Yay! So happy to hear these were a hit ๐Ÿ™‚ Thank you!

  4. Kate says:

    Hi, I’m so looking forward to making this as the your pumpkin bread recipe was a huge success. If I baked the blueberry muffin in a loaf pan, what would be the temperature and for how long? Would this be possible at all? Thank you!

  5. SandraM says:

    5 stars
    Was looking for a recipe to use up flavoured Greek yogurt (that got bought in error…vanilla is not plain). Argh. And came across this one.
    Just came out of the oven and cooled slightly enough to try and we have a winner! The muffin is so light and moist. I used a little less sugar (only because flavoured yogurt contains sugar and I generally like less sweet).
    Will be making a double batch the next time (made 6 in this batch).
    Thanks!

  6. Mary says:

    5 stars
    I’ve had so many failures with blueberries muffin that i almost gave up till I tried your recipe! I substituted 1/3 with coconut flour and halved the sugar for my 2yo. He gobbled them up and finally said mummy one more pls. Thank you!!

    1. chelseamessyapron says:

      I’m so thrilled you found a blueberry muffin that worked and your 2-year-old could enjoy! ๐Ÿ™‚ Thanks for the comment!

  7. Lisa Thompson says:

    Wow!! My search for perfect blueberry muffins ends here. They came out like you would expect from a gourmet bakery. I’ve tried many blueberry muffin recipes only to be disappointed by the berries sinking to the bottom before it cooked all the way. This batter is like glue and really holds the blueberries in place. Love this. Thanks for your sharing!

    1. chelseamessyapron says:

      What a great comment to get ๐Ÿ™‚ I’m thrilled these are the perfect blueberry muffin for you! Thanks for the comment Lisa!

  8. Selkie says:

    4 stars
    Made these yesterday. They are kid approved! so yummy. I did about 2/3rds all purpose and 1/3 whole wheat. I also added a crumble to the top. My 4 year old really liked them, although they aren’t like like starbucks muffins, he says ๐Ÿ˜‰

    1. chelseamessyapron says:

      I’m happy these were kid approved! And the crumble sounds delicious ๐Ÿ™‚ Haha what a cute kid!